1000 Genome data download for help?

Peggy Liang

Junior Member

Join Date: Oct 2013

Posts: 6
- Share
- Tweet
#1

1000 Genome data download for help?

11-15-2013, 12:13 AM

HI,every one
Recently, I downloaded 1000 Genomes data to make CNV discovery analysis,but there are many options ,I do not know what to select ?Which is necessary for CNV discovery?
NA12878.chrom11.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 673 MB
NA12878.chrom11.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 385 kB
NA12878.chrom11.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas 599 B
NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 297 MB
NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 176 kB
NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas 599 B
NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20120522.bam.csra 4.2 GB
NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 15.1 GB
NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 8.4 MB
NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas 614 B
NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.cram 4.2 GB
NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.cram.crai 308 kB
NA12878.unmapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 344 MB
NA12878.unmapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 896 B
NA12878.unmapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas
546 B
And When I look up to high_coverage bam file,The file is too large,almost 250G,Can I choose one chromosome to download?
NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam 234 GB
NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam.bai 9.8 MB
NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam.cram 112 GB
NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam.cram.crai 1.3 MB
Help someone cauld help me.Thanks in advance!
Tags: None

Previous template Next

Essential Discoveries and Tools in Epitranscriptomics

by seqadmin

The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
- Channel: Articles
04-22-2024, 07:01 AM
Current Approaches to Protein Sequencing

by seqadmin

Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
- Channel: Articles
04-04-2024, 04:25 PM

Topics	Statistics	Last Post
Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin Started by seqadmin, 04-11-2024, 12:08 PM	0 responses 59 views 0 likes	Last Post by seqadmin 04-11-2024, 12:08 PM
Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin Started by seqadmin, 04-10-2024, 10:19 PM	0 responses 57 views 0 likes	Last Post by seqadmin 04-10-2024, 10:19 PM
Novel Diagnostic Assay Enhances Ovarian Cancer Detection by seqadmin Started by seqadmin, 04-10-2024, 09:21 AM	0 responses 51 views 0 likes	Last Post by seqadmin 04-10-2024, 09:21 AM
Evolutionary Dynamics of Centromeres: A Comparative Genomic Analysis by seqadmin Started by seqadmin, 04-04-2024, 09:00 AM	0 responses 56 views 0 likes	Last Post by seqadmin 04-04-2024, 09:00 AM

Seqanswers Leaderboard Ad

Announcement

1000 Genome data download for help?

Latest Articles

ad_right_rmr

News