Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
how to get the ID of the sequence matched from a fasta file nmauri General 1 11-20-2015 06:28 AM
Comparing Transcriptomes and finding common transcript IDs dena.dinesh Bioinformatics 6 03-31-2015 06:29 AM
Alternative Splice Transcript finding in RNA Seq Study mehtaaditya RNA Sequencing 0 05-08-2013 09:44 AM

Thread Tools
Old 04-13-2018, 05:26 AM   #1
Junior Member
Location: Denmark

Join Date: Jun 2010
Posts: 9
Default Finding best matched transcript

Hi all,

I have a list of gene fragments in bed format that I would like to find the best matching mRNAs for. This has to adhered to the exon-exon structure of the mRNAs.
So I am trying to find a tool that will allow me to find mRNAs that have exon start and exon end coordinates that match with the gene fragment start and end coordinates.

Seems like this tool should be out there.
Does anyone know what I could use?

Thank you!
Morten is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:19 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO