Hi~everyone
I'm doing some transcriptome work,already have a bunch of transcript ID and corresponding GO IDs.
Now I need statistical information for GO categories and want to visualized some results for my paper. But these genes came from a rare species,most GO soft only support several limited species;and to make it worse, the ID list was too long for most web-based GO tools.
I already tried: DAVID,BiNGO,REViGO,GiTools,some Cytoscape plugins,et al.All Failed because of reasons above. Then ran blast2go, it will take such a long time for mapping.Although I got GO IDs,but b2g don't take them as input,only take blast results...Faint!
Could anybody give me a clue? Soft/package to take genes name/GO_IDs as input, and export some visualized results(even do categories count will be accepted) will be fine!
Thank you! and I'am glad to share any information with you~
I'm doing some transcriptome work,already have a bunch of transcript ID and corresponding GO IDs.
Now I need statistical information for GO categories and want to visualized some results for my paper. But these genes came from a rare species,most GO soft only support several limited species;and to make it worse, the ID list was too long for most web-based GO tools.
I already tried: DAVID,BiNGO,REViGO,GiTools,some Cytoscape plugins,et al.All Failed because of reasons above. Then ran blast2go, it will take such a long time for mapping.Although I got GO IDs,but b2g don't take them as input,only take blast results...Faint!
Could anybody give me a clue? Soft/package to take genes name/GO_IDs as input, and export some visualized results(even do categories count will be accepted) will be fine!
Thank you! and I'am glad to share any information with you~
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