Hi,
I have a Contigs,fasta file genered form Meta-Ray, Contigs.fasta has many shorts contigs and I want to eliminate these Contigs, but I do not know what is minimal lenght of quality to filter these Contigs. I need to use Contigs.fasta (filtered) in a other analysis, example a blast multifasta to search SNPs.
Thanks.
I have a Contigs,fasta file genered form Meta-Ray, Contigs.fasta has many shorts contigs and I want to eliminate these Contigs, but I do not know what is minimal lenght of quality to filter these Contigs. I need to use Contigs.fasta (filtered) in a other analysis, example a blast multifasta to search SNPs.
Thanks.
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