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  • How to get SNP array data ?

    Hi ,dears.
    I want to download some SNPs Array data. Such as a paper , they genotyped some samples by Illumina Porcine 60KSNPs array, I want get the raw data(before their genotyping ) if these data are public. Is any database to store them? How about Ensemble...

  • #2
    Why not just contact one of the authors of the paper, and ask them? Their contact information should be on the publication, or easily found with a web search.

    There are numerous public SNP databases, so its impossible to tell you which one some particular unknown publication's data may be in.
    Michael Black, Ph.D.
    ScitoVation LLC. RTP, N.C.

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    • #3
      Check NCBI Geo ...

      NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.


      They might have some raw data, but be careful sometimes it's processed.

      This one claims some raw data ...
      NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.

      Supplementary file Size Download File type/resource
      GSE26436_raw_data.txt.gz 1.3 Mb (ftp)(http) TXT
      GSE26436_summary.xls.gz 7.0 Mb (ftp)(http) XLS
      Last edited by Richard Finney; 07-10-2014, 09:40 AM.

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      • #4
        Thank you!I will be careful to process them!

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