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Old 08-23-2017, 01:05 PM   #1
cascoamarillo
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Location: MA

Join Date: Oct 2010
Posts: 157
Default makeMetaGeneProfile.pl from HomerTools

Hello,
Just a quick question regarding the script makeMetaGeneProfile.pl from HomerTools, used for creating metagene profiles:
http://homer.ucsd.edu/homer/ngs/quantification.html

So it is similar to annotatePeaks.pl script, but I don't get the Y axis of the output (well the output is a tab delimited file, so I mean the headers of the file).

In the web I posted it says:"peaks per pb per gene", which I understand and is what I get if I used a peak.bed file (option -p). But when I use a tag-file (option -d), it reports a "Coverage", which I don't know what kind of coverage it is... It's like a high value coverage...maybe is a sum of all coverages reported for all genes?

Thank you.
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