Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • CummeRbund - PCA

    Hello,

    I'm using the PCA plot function implemented in the CummeRbund package. The package is very user-friendly, however, I can't find a way to get the eigenvalues or the percentage of each principal component (PC1, PC2, PC3...). Does anyone know how to retrieve this information, if possible?

    I would appreciate any feedback.

    Thanks in advance!

    Kind regards,

    Vinicius

  • #2
    eigenvalues PCA Cummerbund

    Hello Vinicious

    Did you got an asnwer to your question?
    I am wondering the same about the eigenvectors in the Cumerbund PCA

    Comment


    • #3
      Hi,

      No, I didn't get any feedback.

      What I did was to extracted the geneset of my interest from CummeRbund and plot the PCAs using the ade4 package. It is also a very easy package to work with.

      Best,

      Vinicius

      Comment


      • #4
        vilperte, would you mind sharing your workflow for obtaining that geneset and using it with ade4? thank you

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Techniques and Challenges in Conservation Genomics
          by seqadmin



          The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

          Avian Conservation
          Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
          03-08-2024, 10:41 AM
        • seqadmin
          The Impact of AI in Genomic Medicine
          by seqadmin



          Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
          02-26-2024, 02:07 PM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, 03-14-2024, 06:13 AM
        0 responses
        34 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-08-2024, 08:03 AM
        0 responses
        72 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-07-2024, 08:13 AM
        0 responses
        81 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-06-2024, 09:51 AM
        0 responses
        68 views
        0 likes
        Last Post seqadmin  
        Working...
        X