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Old 04-11-2016, 06:11 AM   #1
Jennifer_Rdn
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Location: Nantes, France

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Question Annotate peaks based on Histon Mark

Hi everyone,

I've performed ChIP-seq analysis on TFs for a specific cell line for which I only have three histones marks (H3K4me1, H3K27ac and H3K4me3). I used HOMER to annotate differents peak from my datas but now I would like to use these histones marks to improve the annotation (for example if one peak is present as the same region than H3K27ac and H3K4me1 peaks, I would like to say that this region is an active enhancer).

Does somebody have already done this kind of analysis?

Thanks in advance,
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Old 04-11-2016, 06:23 AM   #2
GenoMax
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For reference, cross-posted: https://www.biostars.org/p/186058/
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