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  • Wierd MACS error

    Hey all,

    I am trying to install MACS, but I get this error:
    $ python setup.py install
    /usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'console'
    warnings.warn(msg)
    /usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'app'
    warnings.warn(msg)
    running install
    running build
    running build_py
    running build_scripts
    running install_lib
    running install_scripts
    changing mode of /usr/local/bin/elandmulti2bed.py to 755
    changing mode of /usr/local/bin/elandresult2bed.py to 755
    changing mode of /usr/local/bin/macs to 755
    running install_egg_info
    Removing /usr/local/lib/python2.6/dist-packages/MACS-1.3.6.1.egg-info
    Writing /usr/local/lib/python2.6/dist-packages/MACS-1.3.6.1.egg-info

    Then when I try to run MACS, I only get the help screen.

    I am running 64-bit Ubuntu (jaunty) on a dual core AMDx64 with 4GB memory.

    Any ideas?
    Thanks in advance!

  • #2
    Hi

    Originally posted by RockChalkJayhawk View Post
    Hey all,

    I am trying to install MACS, but I get this error:
    $ python setup.py install
    /usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'console'
    warnings.warn(msg)
    /usr/lib/python2.6/distutils/dist.py:266: UserWarning: Unknown distribution option: 'app'
    warnings.warn(msg)
    These are only py2.6 warnings, no errors... MACS should be running fine.

    Originally posted by RockChalkJayhawk View Post
    Then when I try to run MACS, I only get the help screen.
    Well, that's exactly how MACS works! :-)
    No options -> help printed
    You will need to specify your options to get some results (i.e. at least the "treatment" file).

    d

    Comment


    • #3
      I did give it options
      ~/Desktop/MACS$ macs s_7_output.bed --wig

      The bed file is in the MACS directory

      Comment


      • #4
        Originally posted by RockChalkJayhawk View Post
        I did give it options
        ~/Desktop/MACS$ macs s_7_output.bed --wig

        The bed file is in the MACS directory
        you need to specify the treatment with the -t option, i.e.

        Code:
        macs -t s_7_output.bed
        d

        Comment


        • #5
          wow...I am stupid.

          That's what I get for doing any work on Mondays.

          Thanks d. It's running now

          Comment


          • #6
            Nevermind :-)

            After all I also think that monday is not a good day to work... http://www.youtube.com/watch?v=TCsbnW91CGc

            :-)

            Comment

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