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Old 12-15-2010, 08:08 PM   #1
Location: Melbourne

Join Date: Jan 2010
Posts: 21
Default Insert size for Pindel

For indel detection with Pindel insert size needs to be specified for the sam2pindel step.
Is it recommended to use something like Picard's CollectInsertSizeMetrics to determine the mean insert size for all reads in the BAM file and then supply that value to Pindel?
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