Hello
Recently, I have been working on the comparison of plant genomes. And I want to identify SVs and CNVs in my samples. I have been looking for programs capable of doing this, but it seems the majority of the programs detecting CNV are designed for human, and compatible with other animal genomes or bacterial genomes, like CNVnator,Control-FREEC, cn.MOPS,PennCNV,etc. When I looked for papers citing these programs, they are all about human, animal,or bacterial genomes. Does anyone have the experience with CNV detection of plant genome, any suggestions or recommendations?
Thanks in advance!
Guannan
Recently, I have been working on the comparison of plant genomes. And I want to identify SVs and CNVs in my samples. I have been looking for programs capable of doing this, but it seems the majority of the programs detecting CNV are designed for human, and compatible with other animal genomes or bacterial genomes, like CNVnator,Control-FREEC, cn.MOPS,PennCNV,etc. When I looked for papers citing these programs, they are all about human, animal,or bacterial genomes. Does anyone have the experience with CNV detection of plant genome, any suggestions or recommendations?
Thanks in advance!
Guannan
Comment