GenBank to .tbl (Sequin format) - Page 2

wanyu · 11-27-2015, 11:40 PM

Quote:

Originally Posted by Bioinform

Hi Wanyu,

i get the following error.

pythogn gbk2tbl.py --modifiers modifier.txt PST.gbk

gbk2tbl.py: error: unrecognized arguments: PST.gbk

Thanks

Please use: python gbk2tbl.py --modifiers modifier.txt < PST.gbk, which means that the script reads the GenBank file from the standard input.

iqra · 01-15-2019, 02:57 AM

i want to run this command .but i dont know how to get /make input file for this command
$ python gbk2tbl.py --modifiers modifier.txt < PST.gbk 2> stderr.txt

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01-15-2019, 02:57 AM	#22
iqra Junior Member Location: pakistan Join Date: Jan 2019 Posts: 1	convert the gff3 file from ensembl into 'feature table' (Sequin format/.tbl file).? i want to run this command .but i dont know how to get /make input file for this command $ python gbk2tbl.py --modifiers modifier.txt < PST.gbk 2> stderr.txt