I downloaded bowtie2-2.6.0 from github, extracted, and installed it. I added it to path using:
and confirmed it using:
it appears to be added but when I try to build and index using combined files from chromFA.tar.gz using:
What did I do wrong? Thank you .
Code:
echo "export PATH=\$PATH:export PATH=$PATH:"/media/C2F8EFBFF8EFAFB9/bowtie2-2.6.0"/" >> ~/.bashrc
Code:
cat ~/.bashrc
Code:
/media/C2F8EFBFF8EFAFB9/picard-tools-1.135/:/media/C2F8EFBFF8EFAFB9/bowtie2-2.6.0/
Code:
bowtie2-build hg19.fa hg19 No command 'bowtie2-build' found, did you mean: Command 'bowtie-build' from package 'bowtie' (universe) bowtie2-build: command not found
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