The title pretty much says it all. I'm trying to put together a workshop and I need some public RNA-seq data.
More specifically, I need Illumina paired-end RNA-seq data from 2 conditions with at least four replicates per condition. Preferably in human. As I'm going to do some comparisons between cufflinks/cuffdiff and DEXSeq, ideally the data would result from an experiment messing around with some splicing factors so we have some interesting alternative splicing / exon use results to look at. I need four replicates in at least one group because I'm going to do the same experiment they did in the DEXSeq manuscript - comparing controls to controls to see how many "significant" results each method finds when ideally they shouldn't find any.
I've searched around GEO/SRA (limiting by platform - GAIIx or HiSeq) and I couldn't find anything that met my needs.
Any suggestions?
More specifically, I need Illumina paired-end RNA-seq data from 2 conditions with at least four replicates per condition. Preferably in human. As I'm going to do some comparisons between cufflinks/cuffdiff and DEXSeq, ideally the data would result from an experiment messing around with some splicing factors so we have some interesting alternative splicing / exon use results to look at. I need four replicates in at least one group because I'm going to do the same experiment they did in the DEXSeq manuscript - comparing controls to controls to see how many "significant" results each method finds when ideally they shouldn't find any.
I've searched around GEO/SRA (limiting by platform - GAIIx or HiSeq) and I couldn't find anything that met my needs.
Any suggestions?
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