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Old 11-06-2009, 09:28 PM   #1
Location: Norway

Join Date: Aug 2008
Posts: 35
Default Gapped alignment using SOAP?

Hi all,

I understand that SOAP should be able to perform gapped alignment, but despite trying different values for the -g option, I don't seem to see any indels in the assembly when I view it in MapView. Is this a SOAP issue or a MapView issue (or both)?

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