SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Bismark v0.6.beta1: Now supporting gapped Bisulfite-Seq alignments fkrueger Bioinformatics 6 03-19-2012 05:06 AM
Gapped alignment with RNA-Seq agc RNA Sequencing 2 12-21-2010 08:03 PM
bfast gapped alignment Protaeus Bioinformatics 1 08-30-2010 09:33 PM
Gapped Alignment agc Bioinformatics 3 06-07-2010 09:20 AM
Gapped alignment using SOAP? MattB Bioinformatics 0 11-06-2009 09:28 PM

Reply
 
Thread Tools
Old 10-26-2009, 01:50 PM   #1
amaer
Member
 
Location: San Diego

Join Date: Oct 2009
Posts: 15
Default SOAP2 and gapped alignments

Has anybody used SOAP2 with gapped alignments? If yes, what did you specify in parameters?

We recently got a Linux box and installed SOAP2 on it, the purpose of that being to do gapped alignments on Solexa data. I have tried, but I never got back gapped alignments, only 1 or 2 mismatches.
Thanks.
amaer is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:52 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO