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  • hg18 or hg19

    Does anybody know the difference between the following files for Bowtie?
    File: h_sapiens_37_asm.ebwt.zip (27-08-09) and
    File: h_sapiens_asm.ebwt.zip (18-02-09)
    Files found from:


    Is it a difference in the genomes or something else?
    I want to be using hg18 version of the genome

    Cheers

    L

  • #2
    If you look at the 'pre-built indexes' panel on the right of that page you can see what the different files are.

    The h_sapiens_37 comes from the new GRCh37 assembly from earlier this year. The h_sapiens_asm is the older NCBI36 assembly, which would correspond to hg18.

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