I've found a few threads about this posted previously but I think the new version of blast+ does not support the -k command that seemed to work before.
I'm running a tblastx search and so I will sometimes get six frameshift HSPs per hit (the correct reading frame being the highest scoring) when I really only want to keep the first one. I don't want to limit my total results to a maximum of one hit, just the HSP per hit.
Can anyone help me with this?
I'm running a tblastx search and so I will sometimes get six frameshift HSPs per hit (the correct reading frame being the highest scoring) when I really only want to keep the first one. I don't want to limit my total results to a maximum of one hit, just the HSP per hit.
Can anyone help me with this?
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