Hi,
I am trying to learn how to use CASAVA 1.8. I am trying to demultiplex the samples using the configureBclToFastq.pl . I am having trouble understanding the --use-bases-mask option. For example, if I have a 2X75 bp PE run with 6bp long indices, then would the following be correct:
--use-bases-mask y75n,I6n,Y75n
Could anybody please help me understand it?
Thanks,
P
I am trying to learn how to use CASAVA 1.8. I am trying to demultiplex the samples using the configureBclToFastq.pl . I am having trouble understanding the --use-bases-mask option. For example, if I have a 2X75 bp PE run with 6bp long indices, then would the following be correct:
--use-bases-mask y75n,I6n,Y75n
Could anybody please help me understand it?
Thanks,
P
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