Dear All,
I have done analyses on RNA-seq data that finds putative isoforms, differentially expressed genes/isoforms and gives a more complete picture of a tissues transcriptome.
I was wondering if anyone had any ideas on what is a "must have" inside a good transcriptome paper.
I have dabbled with bowtie/tophat/cufflinks/deseq,edgeR,DEGSeq and some others packages and now it is time to write something up.
It seems there are many options and things I could include out there and I would be interested in some views from other transcriptomers.
Thank you,
John.
I have done analyses on RNA-seq data that finds putative isoforms, differentially expressed genes/isoforms and gives a more complete picture of a tissues transcriptome.
I was wondering if anyone had any ideas on what is a "must have" inside a good transcriptome paper.
I have dabbled with bowtie/tophat/cufflinks/deseq,edgeR,DEGSeq and some others packages and now it is time to write something up.
It seems there are many options and things I could include out there and I would be interested in some views from other transcriptomers.
Thank you,
John.
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