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  • peak height on chip-seq

    Hello,

    I am working on peak calling of chip-seq data, I am using cisgenome to do the peak calling, after the bed files of detected peaks were loaded into IGV, it only shows the regions of the peaks, I also would like to see the peak height for each peak. Does anyone know the tools that have the function to generate the visualization file to show the peak height as well?
    I heard that sole-search could do it, but the input file format confuses me.

    Thanks,
    Last edited by emilyjia2000; 08-13-2012, 01:34 PM.

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