SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
no error and no output from cuffcompare hibachings2013 Bioinformatics 1 03-02-2015 02:59 PM
Error message in cuffcompare Line RNA Sequencing 3 09-20-2012 12:05 PM
BFAST malloc error CS Student General 1 01-11-2012 05:16 PM
BFAST malloc error under OS X davidkip Bioinformatics 13 08-31-2011 01:04 AM
Cuffcompare Xlocus error griffon42 Bioinformatics 10 04-11-2011 03:03 AM

Reply
 
Thread Tools
Old 04-06-2010, 11:20 AM   #1
genec
Member
 
Location: San Francisco, CA, USA

Join Date: Oct 2009
Posts: 12
Default malloc error in cuffcompare

I'm getting a malloc error when running cuffcompare v0.8.2 on Mac OS X.
Here is the verbose messaging when the error appears:

Code:
 Missed introns:        77098/240992 ( 32.0%)
  Wrong introns:        3732/127345 (  2.9%)
 Missed loci:   0/25081 (  0.0%)
  Wrong loci:   100521/156958 ( 64.0%)
Tracking transcripts across 10 query files..
Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr1.fa'
Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr2.fa'
Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr3.fa'
Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr4.fa'
Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr5.fa'
cuffcompare(42796) malloc: *** error for object 0x1d0630e20: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
Abort trap
Has anyone else seen this? Cole et al, let me know if you want any additional data to help debug this.

Gene
genec is offline   Reply With Quote
Reply

Tags
cuffcompare, error, malloc

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 12:55 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO