Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
XLOC gene id JMo RNA Sequencing 22 04-02-2015 10:35 AM
UCSC canonical transcripts with identifiers in GTF traeki Bioinformatics 0 02-01-2012 01:00 PM
Appending /1 or /2 to read identifiers (illumina 1.8+ format) Kennels Bioinformatics 3 10-24-2011 08:07 PM
Definition/Origin of XLOC clsppb Bioinformatics 0 10-19-2011 11:47 AM
Xloc MrRight RNA Sequencing 0 06-27-2011 02:32 AM

Thread Tools
Old 05-31-2012, 10:42 AM   #1
Location: Philadelphia, PA

Join Date: Dec 2009
Posts: 55
Default cufflinks XLOC identifiers

Hi all - I'm using tophat/cufflinks/cuffdiff to compare RNA-Seq samples for differential expression. cuffdiff reports in a file the differential expression of cds regions. The id's for each region are XLOC. How do I get the gene ID from the corresponding GTF file? The XLOCs mean nothing to me...
golharam is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:32 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO