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Old 05-31-2012, 10:42 AM   #1
golharam
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Location: Philadelphia, PA

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Default cufflinks XLOC identifiers

Hi all - I'm using tophat/cufflinks/cuffdiff to compare RNA-Seq samples for differential expression. cuffdiff reports in a file the differential expression of cds regions. The id's for each region are XLOC. How do I get the gene ID from the corresponding GTF file? The XLOCs mean nothing to me...
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