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Old 11-21-2010, 11:07 PM   #1
agc
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Location: Jerusalem

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Default Max Mapping / SNP / Consensus Quality in pileup files

I'm having trouble finding documentation on these values - does anyone know how they are calculated, or what they mean?

Thanks.
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Old 11-22-2010, 06:42 AM   #2
Bruins
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Default

samtools.sourceforge.net/SAM1.pdf
http://sourceforge.net/apps/mediawik...itle=Main_Page

There is also a lot of information on this forum.
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