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Old 04-15-2010, 08:29 AM   #1
prm36
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Location: Edinburgh

Join Date: Mar 2010
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Default MAQ paired ends

Hi all, I'm running maq.pl easyrun to assemble bacterial sequences. However I am not getting the unmapped reads dumped to a file as I do when assembling single end reads.

Is it possible to dump the unmapped reads or does anyone know of a workaround?

Cheers

Paul
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