Hello! I just started an internship with a bioinformatics group that is currently looking into clinical applications of next generation sequencing technology. One of the projects we’re working on is to sequence someone’s genome and find genes that enable susceptibility to certain diseases, such as cancer. I was wondering if you guys have a recommendation for pathway analysis software. Also, if any of you understand the mechanics of pathway analysis could you please explain to me how it works, or at least direct me to some helpful links? Thanks.
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Hi Pesto,
I hope this will help you out a bit and it's not too late. I'm learning on this too. Just an overview on how it works
Just realized about the question, sorry for the mistake, u can try looking at this website for PathVisio
Dowload available at http://www.pathvisio.org/wiki/PathVisioDownloadLast edited by HuiXin; 05-02-2011, 07:48 PM.
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Hi Pesto,
you might have a look at Genostar, i think they have pathway analysis software. You can download a trial at their website;
This website is for sale! genostar.com is your first and best source for all of the information you’re looking for. From general topics to more of what you would expect to find here, genostar.com has it all. We hope you find what you are searching for!
Boetsie
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One of the fastest most accurate pathway analysis solutions is Ingenuity iReport. Upload your NGS: RNA-Seq Cuff-Diff files at http://www.ingenuity.com/getireport/ and get a free preview of your iReport including pathways, processes, interactions, etc.
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Originally posted by bkmacy View PostOne of the fastest most accurate pathway analysis solutions is Ingenuity iReport. Upload your NGS: RNA-Seq Cuff-Diff files at http://www.ingenuity.com/getireport/ and get a free preview of your iReport including pathways, processes, interactions, etc.
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