chr10 856918 A W 109 109 60 15 ,...T,..t.,T,,, aaN`a_aa`_`_b__
the above is one line of my samtool pileup results, in this position, the reference base is A, so the reverse strand base should be T,
but in the bases column(9th column), there is one 't', which means a mismatch on reverse strand(but in fact it should be one match), how to explain this ? or a bug ?
i don't know whether i make the question clear, anyone can help me
thanks
ZSL
the above is one line of my samtool pileup results, in this position, the reference base is A, so the reverse strand base should be T,
but in the bases column(9th column), there is one 't', which means a mismatch on reverse strand(but in fact it should be one match), how to explain this ? or a bug ?
i don't know whether i make the question clear, anyone can help me
thanks
ZSL
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