SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Detection of differentially methylated regions (DMRs) ecSeq Bioinformatics Epigenetics 0 01-18-2016 12:06 PM
Detection of differentially methylated regions (DMRs) ecSeq Bioinformatics Bioinformatics 0 01-18-2016 11:07 AM
Differentially Methylated Regions Fernas Bioinformatics 4 10-30-2013 09:08 AM
Differentially methylated regions analysis Jluis Bioinformatics 8 09-18-2012 06:24 AM
PubMed: Characterization of Differentially Methylated Regions in 3 Bovine Imprinted G Newsbot! Literature Watch 0 12-17-2010 03:20 AM

Reply
 
Thread Tools
Old 01-21-2016, 01:50 AM   #1
antgomo
Junior Member
 
Location: Barcelona

Join Date: Nov 2011
Posts: 5
Default Differentially Methylated Regions (DMRs) finding in time series experiment

Hi,

I am dealing with Whole Genome Bisulfite Data (WGBS), form a time series experiment (4 stages), and I am wondering i f I could do Differentially Methylated Regions (DMRs) in a time series continous procedure. I mean, I used to find DMRs between One condition and Another, but not in a time course (DMRs that change sequentially between stage 1 and 4).

My previous thinking was to find those DMRs between stage 1 and 2, 2 and 3 and 3 and 4, and then overlap them using bedtools to find those one that are changing sequentially



DO you know a more straightforward strategy?
antgomo is offline   Reply With Quote
Reply

Tags
bisulfite-seq, dmr, time series

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:37 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO