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  • help in building sequences in bowtie

    Yes, after the initial question, I still need help. I am working in Linux koala and need help building simple files. For instance, i cannot name a path correctly:

    home$ bowtie -f -v 0 -m 1 flymetothemoon -f /home/lilithdog/bin will return a message saying there are no readable files in /home/lilithdog/bin.

    This is exactly what is happening:

    :~/bin/indexes$ bowtie -f -v0 -m1 flymetothemoon -f /home/angela/bin/
    Warning: Could not find any reads in "/home/angela/bin/"
    # reads processed: 0
    # reads with at least one reported alignment: 0 (0.00%)
    # reads that failed to align: 0 (0.00%)
    No alignments
    Last edited by lilithdog; 12-15-2009, 02:54 PM.

  • #2
    thank you, I finally figured out what i was doing wrong on my own.

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