Hello,
I'm trying to use Newbler de novo to assemble mated reads in FASTA/QUAL format.
Do you know if there is an implicit name convention for the paired read names?
That is not a problem if the input is an sff file. It seems to me that the assembler identifies the linker and appends _left & _right to the 5' & 3' ends.
Also, is there a way to explicitly specify a library's mean/stdev?
Thanks.
I'm trying to use Newbler de novo to assemble mated reads in FASTA/QUAL format.
Do you know if there is an implicit name convention for the paired read names?
That is not a problem if the input is an sff file. It seems to me that the assembler identifies the linker and appends _left & _right to the 5' & 3' ends.
Also, is there a way to explicitly specify a library's mean/stdev?
Thanks.
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