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Old 08-06-2012, 03:36 PM   #1
leukogenom
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Default TMAP: exception src/io/tmap_file.c

TMAP can't seem to open any reference files that I pass it. I've tried several different reference files but I always get the following exception

src/io/tmap_file.c:83: in function "tmap_file_fopen"
./<filename>.fasta.fasta.tmap.anno
fatal error: could not open the file
the file stream error was: No such file or directory

I'm not sure why tmap_file_fopen is trying to open a file that is named
<filename.fasta.fasta.tmap.anno>
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Old 08-13-2012, 06:13 PM   #2
nilshomer
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Did you try indexing the FASTA first with "tmap index -vf <in.fasta>"?
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Old 08-15-2012, 08:44 AM   #3
leukogenom
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Thank you Nils. That did the trick
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