I have vcf files which i generated using samtools. i wish to annotate variant information in these files using annovar. will the following work?
perl convert2annovar.pl in.vcf -format vcf4
perl annotate_variation.pl -buildver hg19 in.vcf humandb
in particular, will the above take care of the fact that inside the humandb folder (of annovar) i am finding hg18 related files?
Thanks for your help.
perl convert2annovar.pl in.vcf -format vcf4
perl annotate_variation.pl -buildver hg19 in.vcf humandb
in particular, will the above take care of the fact that inside the humandb folder (of annovar) i am finding hg18 related files?
Thanks for your help.
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