Dear All,
Does have anyone idea what might have cause this crash?
Thanks.
Michal
-------
dindel --analysis getCIGARindels --bamFile ./Post_Assembly/Temp/2007.02142B.normal.merged.out.bam --outputFile normal.sorted.bam --ref ./Reference_Indexed/Human36
-------
Reading BAM file: ./Post_Assembly/Temp/2007.02142B.normal.merged.out.bam
Parsing indels from CIGAR strings...
Number of reads read: 1000000
Number of reads read: 2000000
Number of reads read: 3000000
Number of reads read: 4000000
Number of reads read: 5000000
Number of reads read: 6000000
Number of reads read: 7000000
Number of reads read: 8000000
Number of reads read: 9000000
Number of reads read: 10000000
Number of reads read: 11000000
Number of reads read: 12000000
Number of reads read: 13000000
Number of reads read: 14000000
Number of reads read: 15000000
Number of reads read: 16000000
Number of reads read: 17000000
Number of reads read: 18000000
error: faidx error, len==0
start: -88 end:
error: faidx error, len==0
start: -48 end:
error: faidx error, len==0
start: -4 end:
Does have anyone idea what might have cause this crash?
Thanks.
Michal
-------
dindel --analysis getCIGARindels --bamFile ./Post_Assembly/Temp/2007.02142B.normal.merged.out.bam --outputFile normal.sorted.bam --ref ./Reference_Indexed/Human36
-------
Reading BAM file: ./Post_Assembly/Temp/2007.02142B.normal.merged.out.bam
Parsing indels from CIGAR strings...
Number of reads read: 1000000
Number of reads read: 2000000
Number of reads read: 3000000
Number of reads read: 4000000
Number of reads read: 5000000
Number of reads read: 6000000
Number of reads read: 7000000
Number of reads read: 8000000
Number of reads read: 9000000
Number of reads read: 10000000
Number of reads read: 11000000
Number of reads read: 12000000
Number of reads read: 13000000
Number of reads read: 14000000
Number of reads read: 15000000
Number of reads read: 16000000
Number of reads read: 17000000
Number of reads read: 18000000
error: faidx error, len==0
start: -88 end:
error: faidx error, len==0
start: -48 end:
error: faidx error, len==0
start: -4 end:
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