With a clean install :
But again:
Any ideas?
Code:
Decompressing /tmp/bcl2fastq-1.8.4/src/../redist/cmake-2.8.4.tar.gz --------------------------------------------- CMake 2.8.4, Copyright 2000-2009 Kitware, Inc. C compiler on this system is: /compilers/gcc/4.5/bin/gcc C++ compiler on this system is: /compilers/gcc/4.5/bin/g++ Makefile processor on this system is: gmake /compilers/gcc/4.5/bin/g++ is GNU compiler /compilers/gcc/4.5/bin/g++ has STL in std:: namespace /compilers/gcc/4.5/bin/g++ has ANSI streams /compilers/gcc/4.5/bin/g++ has streams in std:: namespace /compilers/gcc/4.5/bin/g++ has sstream /compilers/gcc/4.5/bin/g++ has operator!=(string, char*) /compilers/gcc/4.5/bin/g++ has stl iterator_traits /compilers/gcc/4.5/bin/g++ has standard template allocator /compilers/gcc/4.5/bin/g++ has allocator<>::rebind<> /compilers/gcc/4.5/bin/g++ does not have non-standard allocator<>::max_size argument /compilers/gcc/4.5/bin/g++ has stl containers supporting allocator objects /compilers/gcc/4.5/bin/g++ has header cstddef /compilers/gcc/4.5/bin/g++ requires template friends to use <> /compilers/gcc/4.5/bin/g++ supports member templates /compilers/gcc/4.5/bin/g++ has standard template specialization syntax /compilers/gcc/4.5/bin/g++ has argument dependent lookup /compilers/gcc/4.5/bin/g++ has struct stat with st_mtim member /compilers/gcc/4.5/bin/g++ has ios::binary openmode /compilers/gcc/4.5/bin/g++ has ANSI for scoping --------------------------------------------- ... Cleaning up /tmp/bcl2fastq-1.8.4-build/bootstrap/build/cmake-2.8.4 CMake installed successfully Using installed /tmp/bcl2fastq-1.8.4-build/bootstrap/bin/cmake -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /compilers/gcc/4.5/bin/gcc -- Check for working C compiler: /compilers/gcc/4.5/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /compilers/gcc/4.5/bin/g++ -- Check for working CXX compiler: /compilers/gcc/4.5/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- install prefix: /software/bcl2fastq/bcl2fastq-1.8.4 -- install exec prefix: . -- install bin dir: ./bin -- install lib dir: ./lib/bcl2fastq-1.8.4 -- install libexec dir: ./libexec/bcl2fastq-1.8.4 -- install include dir: include/bcl2fastq-1.8.4 -- install data dir: share/bcl2fastq-1.8.4 -- install doc dir: doc/bcl2fastq-1.8.4 -- install man dir: man -- Verifying target directories access -- Creating external tools in subdirectory opt -- Could NOT find Boost -- Boost 1.44.0 not found. Boost will be built from the distribution... Decompressing /tmp/bcl2fastq-1.8.4/src/../redist/boost_1_44_0.tar.gz Building Boost.Jam with toolset gcc... tools/jam/src/bin.linuxx86_64/bjam Unicode/ICU support for Boost.Regex?... not found. Generating Boost.Build configuration in project-config.jam... Bootstrapping is done. To build, run: ./bjam To adjust configuration, edit 'project-config.jam'. Further information: - Command line help: ./bjam --help - Getting started guide: http://www.boost.org/more/getting_started/unix-variants.html - Boost.Build documentation: http://www.boost.org/boost-build2/doc/html/index.html ...found 14 targets... ...updating 8 targets... common.mkdir bin.v2 common.mkdir bin.v2/libs common.mkdir bin.v2/libs/regex common.mkdir bin.v2/libs/regex/build common.mkdir bin.v2/libs/regex/build/gcc-4.5.4 common.mkdir bin.v2/libs/regex/build/gcc-4.5.4/debug gcc.compile.c++ bin.v2/libs/regex/build/gcc-4.5.4/debug/has_icu_test.o libs/regex/build/has_icu_test.cpp:12:30: erreur fatale: unicode/uversion.h : Aucun fichier ou dossier de ce type compilation terminée. "g++" -ftemplate-depth-128 -O0 -fno-inline -Wall -g -fPIC -DBOOST_ALL_NO_LIB=1 -DBOOST_HAS_ICU=1 -I"." -c -o "bin.v2/libs/regex/build/gcc-4.5.4/debug/has_icu_test.o" "libs/regex/build/has_icu_test.cpp" ...failed gcc.compile.c++ bin.v2/libs/regex/build/gcc-4.5.4/debug/has_icu_test.o... ...skipped <pbin.v2/libs/regex/build/gcc-4.5.4/debug>has_icu for lack of <pbin.v2/libs/regex/build/gcc-4.5.4/debug>has_icu_test.o... ...failed updating 1 target... ...skipped 1 target... ...updated 6 targets... Performing configuration checks - has_icu builds : no Component configuration: - date_time : building - filesystem : building - graph : not building - graph_parallel : not building - iostreams : building - math : not building - mpi : not building - program_options : building - python : not building - random : not building - regex : building - serialization : building - signals : not building - system : building - test : not building - thread : building - wave : not building ...patience... ... ...patience... ...found 17154 targets... ...updating 8274 targets... ... ...updated 8274 targets... boost-1_44_0 installed successfully -- Successfuly built boost 1.44.0 from the distribution package... -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for floorf -- Looking for floorf - found -- Looking for round -- Looking for round - found -- Looking for roundf -- Looking for roundf - found -- Looking for powf -- Looking for powf - found -- Looking for erf -- Looking for erf - found -- Looking for erf -- Looking for erf - found -- Looking for erfc -- Looking for erfc - found -- Looking for erfc -- Looking for erfc - found -- All libraries will be statically linked -- Found ZLIB header: /usr/include/zlib.h -- Found ZLIB library: /usr/lib64/libz.a -- gzip compression supported CMake Error at cmake/cxxConfigure.cmake:84 (message): No support for bzip2 compression Call Stack (most recent call first): c++/CMakeLists.txt:33 (include) -- Configuring incomplete, errors occurred!
Code:
$ rpm -qa | grep bzip bzip2-1.0.5-7.el6_0.x86_64 bzip2-libs-1.0.5-7.el6_0.x86_64 bzip2-devel-1.0.5-7.el6_0.x86_64
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