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07-31-2013, 03:41 AM
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#1 |
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Junior Member
Location: norway Join Date: Jan 2013
Posts: 8
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DESeq
Hi,
My name is Anil and i am new to DESeq analysis. By using DESeq script i produced MAplot and i extracted all the genes that are differentially regulated. I got around 295 genes. Now i want to know which genes are up-regulated and down-regulated. Can anyone help me how to find up-regulated and down-regulated genes. Thanks in advance! Anil. |
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07-31-2013, 06:03 AM
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#2 |
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Devon Ryan
Location: Freiburg, Germany Join Date: Jul 2011
Posts: 3,480
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The data frame output from whichever function you used for the statistical test (nbinomTest or nbinomGLMTest) has a log(fold change) column, the sign of which indicates direction of change.
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07-31-2013, 06:55 AM
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#3 |
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Junior Member
Location: norway Join Date: Jan 2013
Posts: 8
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Hi dpryan,
Thankyou for the reply! It's useful. Anil. |
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08-02-2013, 07:38 PM
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#4 |
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Junior Member
Location: China Join Date: Aug 2013
Posts: 1
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GOOD! Thakns to you!
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