Hi,
I am struggling to understand the coverage value (not fpkm) produced by cufflinks. In my case it seems to be much lower than the values produced by htseq-count. I thought the cufflinks coverage was the raw count? Anyone know the difference between this and the htseq-count output?
Jon
I am struggling to understand the coverage value (not fpkm) produced by cufflinks. In my case it seems to be much lower than the values produced by htseq-count. I thought the cufflinks coverage was the raw count? Anyone know the difference between this and the htseq-count output?
Jon