Hi all,
I am aware that deconvolution warnings in the isoforms.fpkm_tracking files generated by cufflinks mean the entry should be treated with suspicion/ignored.
However, am I correct in thinking that the FPKM value for the corresponding gene in the genes.fpkm_tracking file should still be safe to use, since the deconvolution is a transcript-level problem?
Thanks in advance.
I am aware that deconvolution warnings in the isoforms.fpkm_tracking files generated by cufflinks mean the entry should be treated with suspicion/ignored.
However, am I correct in thinking that the FPKM value for the corresponding gene in the genes.fpkm_tracking file should still be safe to use, since the deconvolution is a transcript-level problem?
Thanks in advance.