How to decompress several fastq.gz files and concatenate them into one single .fastq file? There are two kinds of file in the same folder, some ending in ...R2_001.fastq.gz , and others ending in R1_001.fastq.gz. The work is to decompress and concatenate files ending in ...R2_001.fastq.gz into one R2_001.fastq file, and do the same for ...R2_001.fastq.gz files. Really appreciate any help. Thanks -madza
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
gunzip decompresses gz files, cat concatenates them, and * is a wildcard. This is all in the Unix command line once you've moved to the directory with the files.
gunzip *R2_001.fastq.gz
cat *R2_001.fastq > combined_R2_001.fastqProviding nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com
-
Latest Articles
Collapse
-
by seqadmin
The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...-
Channel: Articles
Yesterday, 07:01 AM -
-
by seqadmin
Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...-
Channel: Articles
04-04-2024, 04:25 PM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, 04-11-2024, 12:08 PM
|
0 responses
58 views
0 likes
|
Last Post
by seqadmin
04-11-2024, 12:08 PM
|
||
Started by seqadmin, 04-10-2024, 10:19 PM
|
0 responses
54 views
0 likes
|
Last Post
by seqadmin
04-10-2024, 10:19 PM
|
||
Started by seqadmin, 04-10-2024, 09:21 AM
|
0 responses
45 views
0 likes
|
Last Post
by seqadmin
04-10-2024, 09:21 AM
|
||
Started by seqadmin, 04-04-2024, 09:00 AM
|
0 responses
55 views
0 likes
|
Last Post
by seqadmin
04-04-2024, 09:00 AM
|
Comment