Hi,
I need a copy of config.xml from a 100bp, single reads, GAIIx run (<runfolder>/Dana/Intensity/BaseCalls/config.xml)
a lab in the campus acquired a GAIIx machine. After the first run, they found the RTA was configured improperly (long story). Anyway, now all intensity, bcl, stat, filter, etc. files are intact, but config.xml file is missing. So we could not do BCL to qseq conversion.
But it could be re-constructed from a similar run. Well, it is the first run (other than a shorter phix test run earlier), they don't have a similar run. we modified a file from a 75bp reads run. But we run into errors later on.
So if you happen to have a run from GAIIx for 100 base reads, single end, with 108 cycles (I think it is indexed), we would appreciate a copy of <runfolder>/Dana/Intensity/BaseCalls/config.xml
thank you very much in advance!
X.L.
I need a copy of config.xml from a 100bp, single reads, GAIIx run (<runfolder>/Dana/Intensity/BaseCalls/config.xml)
a lab in the campus acquired a GAIIx machine. After the first run, they found the RTA was configured improperly (long story). Anyway, now all intensity, bcl, stat, filter, etc. files are intact, but config.xml file is missing. So we could not do BCL to qseq conversion.
But it could be re-constructed from a similar run. Well, it is the first run (other than a shorter phix test run earlier), they don't have a similar run. we modified a file from a 75bp reads run. But we run into errors later on.
So if you happen to have a run from GAIIx for 100 base reads, single end, with 108 cycles (I think it is indexed), we would appreciate a copy of <runfolder>/Dana/Intensity/BaseCalls/config.xml
thank you very much in advance!
X.L.
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