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SNPdat: Easy annotation of novel and known SNPs from model and non-model organisms
Dear all,
Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms. (http://www.biomedcentral.com/1471-2105/14/45/abstract)
SNP Data Analysis Tool is a high throughput analysis tool that can provide a comprehensive annotation of both novel and known single nucleotide polymorphisms (SNPs). It is specifically designed for use with organisms which are either not supported by other tools or have a small number of annotated SNPs available, however it can also be used to analyse datasets from organisms which are densely sampled for SNPs. It can be used for analysis of any organism with a draft sequence and annotation (GTF). SNPdat makes possible analyses involving non-model organisms that are not supported by the vast majority of SNP annotation tools currently available.
SNPdat is freely available here: http://code.google.com/p/snpdat/
There is also a sample dataset, manual and short tutorial available from the website (downloads section). There is also a google groups page for SNPdat (https://groups.google.com/forum/?fro...#!forum/snpdat) through which updates, bug fixes and any other news will be passed on to users. Questions and comments can also be posted through the google group.
If anyone would like to try it and give us your comments and suggestions that would be great.
Anthony
Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms. (http://www.biomedcentral.com/1471-2105/14/45/abstract)
SNP Data Analysis Tool is a high throughput analysis tool that can provide a comprehensive annotation of both novel and known single nucleotide polymorphisms (SNPs). It is specifically designed for use with organisms which are either not supported by other tools or have a small number of annotated SNPs available, however it can also be used to analyse datasets from organisms which are densely sampled for SNPs. It can be used for analysis of any organism with a draft sequence and annotation (GTF). SNPdat makes possible analyses involving non-model organisms that are not supported by the vast majority of SNP annotation tools currently available.
SNPdat is freely available here: http://code.google.com/p/snpdat/
There is also a sample dataset, manual and short tutorial available from the website (downloads section). There is also a google groups page for SNPdat (https://groups.google.com/forum/?fro...#!forum/snpdat) through which updates, bug fixes and any other news will be passed on to users. Questions and comments can also be posted through the google group.
If anyone would like to try it and give us your comments and suggestions that would be great.
Anthony