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Old 05-19-2011, 10:34 AM   #1
nseh
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Location: denmark

Join Date: May 2011
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Default Gene list for calculating coverage

Hi all,

Does anybody know where I can find a list of genes in the format specified by GATK (http://www.broadinstitute.org/gsa/wi..._Coverage_v3.0) ??

Are you familier with any usefull tools other than BedTools and GATK for calculating coverage?

Best,
Nat.
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Old 05-22-2011, 06:31 AM   #2
DZhang
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Default

Hi,

I am not sure of the specifics of your project but you may try HTSeq.

Douglas
www.contigexpress.com
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