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Old 09-30-2013, 02:31 PM   #1
Location: Davis, CA

Join Date: Mar 2009
Posts: 82
Default amos Bank2contig

Hi folks,

Wondering if anyone knows how to get a amos utilities to spit out a key showing the relationship between amos bank's IID for a read and that read's original name. I'm trying to get a list of reads in assembled contigs as described here:

bank2contig -S asm2.bnk/ >asm.tsv

This spits out what I need, but I have then need some way to relate the read IID to the read's original name. Ideas?

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