Hi list,
what would be the expected maximum deletion/insertion lenght that could be detected using 75bp single-end illumina reads using BWA/Samtools? Is it possible to maximize the size of the INDEL detected by modifying any alignment parameter without increasing the false positives too much?
Looking forward to your thoughts,
Dave
what would be the expected maximum deletion/insertion lenght that could be detected using 75bp single-end illumina reads using BWA/Samtools? Is it possible to maximize the size of the INDEL detected by modifying any alignment parameter without increasing the false positives too much?
Looking forward to your thoughts,
Dave
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