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  • Using pbShort

    Hi,

    Did anyone have success using pbShort? I have tried several real and sample datasets and it runs without error but always get an empty tam file.

    -Farhat
    Farhat Habib

  • #2
    Use pbShort

    Hi,

    I use the pbShort successfully ...
    What is the sequence of commands and their input parameters that you use at work?

    Monsanto

    Comment


    • #3
      pbShort keeps crashing on me

      I've been trying for about a week to compare a set of about 250k 454 reads to a reasonably small genome (54MB) and the pbShort program keeps crashing on me with an error message of:

      terminate called after throwing an instance of 'std:ut_of_range'
      what(): basic_string::substr


      I've sent an email in to Murth Labs about this but gotten no response. (To be fair, it's been about 24 hours since I sent the message...)

      Has anyone else seen this error before?

      TIA

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      • #4
        That last post should have been std :: out of range. I didn't realize it would automatically emoticon me

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