Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Read counts from SAM file mapped to de novo assembled transcripts using HTSeq-count alan_sm RNA Sequencing 2 06-12-2015 08:54 PM
extract assembled transcripts zchou RNA Sequencing 38 02-17-2014 02:04 AM
Gene name assignment/ Merge genome-based assembled transcripts with de novo transcrip htk De novo discovery 0 04-01-2013 02:32 AM
Identifying intron sequences in de novo assembled transcripts? BobFreemanMA Bioinformatics 2 02-01-2013 06:39 AM
fetch transcripts assembled by cufflinks asling Bioinformatics 6 09-27-2012 09:46 PM

Thread Tools
Old 05-22-2014, 06:19 PM   #1
Location: Xi'an

Join Date: Apr 2013
Posts: 15
Smile how to feed de novo assembled transcripts to PhyloCSF

We have human de novo assembled transcripts. Those transcripts were assembled de novo without human genomic by using Trinity/Newbler. We want to use PhyloCSF to identify coding or noncoding transcripts. How to use PhyloCSF if we only have those sequences in fasta ? Thanks in advance!

Last edited by emanlee; 05-24-2014 at 07:50 PM.
emanlee is offline   Reply With Quote

bed, maf, phylocsf

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:12 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO