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Old 08-25-2009, 12:16 PM   #1
totalnew
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Default BreakDancer problems

Does anyone ever use BreakDancer to detect GSV?

I downloaded it from http://genome.wustl.edu/tools/cancer-genomics, but I found I can't run it successfully, I don't know if I use correct command, does
anyone successfully apply BreakDancer on PE libs? Would you please provide me some examples?

thanks
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Old 08-26-2009, 08:36 AM   #2
pickw
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Default You can find it here

http://breakdancer.sourceforge.net/
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Old 08-27-2009, 12:12 PM   #3
bioinfosm
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Could you post your feedback and comments on using the tool?
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Old 08-27-2009, 03:14 PM   #4
totalnew
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Default

Quote:
Originally Posted by bioinfosm View Post
Could you post your feedback and comments on using the tool?
I am still running the program, the tool is very easy to use, but I may have questions during the running, I will track this thread to post all problems I meet.
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Old 08-29-2009, 12:59 AM   #5
jfshao1984
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After decompressing, there is only one file named "BreakDancer.release-0.0.1r56",and how to use ?
I find that the file is a combination of several perl scripts,but i don't know how to use it.
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Old 08-04-2015, 01:38 AM   #6
simobioinfo
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Default

Hi,
I have problems in installing breakdancer.
I downloaded the zip file from sourceforce and decompressed it.
I found two suddirectories, perl and cpp.
I try to make in cpp directory but I'm not able to compile breakdancer.
Could anyone help me for this issue?
Thanks
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