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Old 04-29-2013, 03:23 AM   #1
kumtl
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Location: Rockville, MD

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Smile Any suggestion for Chip-Seq analysis?

Hi! All,

I'm a newbie for Chip-Seq analysis.
As you guys already know, there are a bunch of software to analyze Chip-Seq data, but I don't know which software is the best up to now. I did some literature search and find "QESEQ" is warranted.

Any other suggestion?
Thanks in advance.

-Kumtl
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Old 04-01-2014, 05:53 PM   #2
pmad
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Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, et al. (2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. doi:10.1371/journal.pcbi.1003326

http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003326


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algorithms, chip-seq, hiseq2000, paired end

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