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Old 06-03-2014, 05:40 AM   #1
Lj Lee
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Location: Malaysia

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Default HLA and KIR typing

I've sequenced some HLA and KIR genes by using Agilent SureSelect target enrichment kit, together with other target regions. The sequencing platform was Illumina paired-end using HiSeq. Any idea is it possible for me to do HLA genotyping from the aligned reads? Any software or method to perform the genotyping? Thanks
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Old 06-03-2014, 11:01 AM   #2
Bukowski
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You might be interested in Omixon for this :

http://www.omixon.com/hla/

This recent paper might also be of interest:

http://www.ncbi.nlm.nih.gov/pubmed/2...?dopt=Abstract

Last edited by Bukowski; 06-03-2014 at 11:26 AM.
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