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Old 04-29-2010, 02:06 AM   #1
johnshembb
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Location: UK

Join Date: Jul 2009
Posts: 3
Question Help please, regulatory elements

Hi All,

I may not in the wrong place, but please help me and you will be really appreciated!

I would like to identify the potential regulatory element (predicted or experimental) from a genome region. I tried to google around, but can not find a database contains all the information. I also tried to search UCSC genome browser, but found out there are so many tracks about expression and regulation that I can not tell which one suit my aim better than the others.
Can you please suggest what kinds of tools/database you're normally to do such job?

Many thanks,
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Old 04-29-2010, 09:57 AM   #2
Uwe Appelt
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Location: Heidelberg, Germany

Join Date: Oct 2009
Posts: 27
Default

try these:

1)
cisRED: Databases of genome-wide regulatory module and element predictions
http://www.cisred.org/

2)
TRANSFAC tools @ http://www.gene-regulation.com/

3) and additionally, here's an overview, pointing to various tools:
http://bip.weizmann.ac.il/toolbox/se...promoters.html

Hope, this helps.

Uwe
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