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Old 02-10-2016, 11:50 PM   #1
papori
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Default BRCA sub type information in TCGA

Hi,
I am looking for the Breast Cancer molecular subtype information in TCGA.
I searched in the clinical data files, but i havnt found it there.
What I found is "stageing" and the "pharmaceutical_therapy_drug_name" per "patient".

Is there a file that contain the molecular subtype information?
(Luminal A,Luminal B,Triple negative/basal-like,HER2 type)

Thanks,
Pap
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Old 02-11-2016, 05:59 AM   #2
GenoMax
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Default

817 of them are in the supplement of a recent Cell paper. (Supplemental Table 1)
http://www.sciencedirect.com/science...92867415011952
This is for the RNAseq data.

@Pap: If you need the calls for the full RNAseq subset then send me a PM.
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